Guidelines for visualizing and annotating rule-based models
نویسندگان
چکیده
منابع مشابه
Guidelines for visualizing and annotating rule-based models.
Rule-based modeling provides a means to represent cell signaling systems in a way that captures site-specific details of molecular interactions. For rule-based models to be more widely understood and (re)used, conventions for model visualization and annotation are needed. We have developed the concepts of an extended contact map and a model guide for illustrating and annotating rule-based model...
متن کاملGuidelines for visualizing and annotating rule-based modelswz
Rule-based modeling provides a means to represent cell signaling systems in a way that captures site-specific details of molecular interactions. For rule-based models to be more widely understood and (re)used, conventions for model visualization and annotation are needed. We have developed the concepts of an extended contact map and a model guide for illustrating and annotating rule-based model...
متن کاملVisualizing Regulation in Rule-based Models
Motivation: Rule-based modeling is a powerful way to model kinetic interactions in biochemical systems. Rules enable a precise encoding of biochemical interactions at the resolution of sites within molecules, but obtaining an integrated global view from sets of rules remains challenging. Current automated approaches to rule visualization fail to address the complexity of interactions between ru...
متن کاملA Framework for Annotating and Visualizing
................................................................................................................. II ACKNOWLEDGEMENT ................................................................................................ III TABLE OF CONTENT ................................................................................................... IV LIST OF FIGURES ..............................
متن کاملRule Chains for Visualizing Evolving Fuzzy Rule-Based Systems
Evolving fuzzy systems are data-driven fuzzy (rule-based) systems supporting an incremental model adaptation in dynamically changing environments; typically, such models are learned on a continuous stream of data in an online manner. This paper advocates the use of visualization techniques in order to help a user gain insight into the process of model evolution. More specifically, rule chains a...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Molecular BioSystems
سال: 2011
ISSN: 1742-206X,1742-2051
DOI: 10.1039/c1mb05077j